Not all patients with celiac disease recover on a gluten-free diet. When specific immunophenotypic changes in the small bowel persist after at least 12 months of strict dietary adherence, the condition meets criteria for Refractory Coeliac Disease Type 2 — a distinct subtype requiring a targeted management approach.
The defining feature of this subtype is an aberrant intraepithelial lymphocyte (IEL) population in the small bowel. These lymphocytes show loss of surface CD3 and CD8 with retained intracytoplasmic CD3 expression. Flow cytometry typically demonstrates ≥ 20% aberrant IELs, and clonality is confirmed by T-cell receptor (TCR) gene rearrangement analysis. This phenotype arises in the context of at least 12 months on a strict gluten-free diet (GFD).